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Particularly noteworthy is the comprehensive analysis of a large dataset spanning 399–610 different tomato varieties (Zhu et al., 2018), which not only encompassed comprehensive variome, transcriptome, and metabolome information but also identified 3,526 mGWAS signals, 2,566 cis‐ expression quantitative trait loci ( cis‐ eQTL), 93,587 trans‐expression quantitative trait loci (trans‐eQTL), and 232,934 expression‐metabolite correlations